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Ligand · NDE

NDE · Adenosine 5'-(trihydrogen diphosphate) P'-5'-ester with 3-(aminocarbonyl)-4-(1-hydroxyl-2-oxo-3-phosphonooxy-propyl)-1-beta-D-ribofuranosylpyridinium inner salt

NDE, Adenosine 5'-(trihydrogen diphosphate) P'-5'-ester with 3-(aminocarbonyl)-4-(1-hydroxyl-2-oxo-3-phosphonooxy-propyl)-1-beta-D-ribofuranosylpyridinium inner salt (C24 H32 N7 O20 P3, 831.5 g/mol), in the MolNFT structures on GenesisL1…

Component
NDE
Formula
C24 H32 N7 O20 P3
Class
ligand
Structures
2
PDB entries
1

Binding sites

NDE in 2 structures; the first of them:

  • 1N1E · Crystal structure of Leishmania mexicana Glycerol-3-phosphate dehydrogenase complexed… · NDE A400 · binds GLY22, SER23, GLY24, ALA25, PHE26, GLY27, HIS45, MET46 and 25 more
  • 1N1E · Crystal structure of leishmania mexicana glycerol-3- phosphate dehydrogenase complexed… · NDE A400 · binds GLY22, SER23, GLY24, ALA25, PHE26, GLY27, HIS45, MET46 and 25 more

Residues it binds most

GLY 4, PHE 4, ALA 4, SER 4, THR 4, ASN 4, LYS 4, PRO 4, VAL 4, LEU 4 (residue and the binding sites it lines).

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