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Ligand · NDD

NDD · 2,6-dicarboxynaphthalene

NDD, 2,6-dicarboxynaphthalene (C12 H8 O4, 216.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
NDD
Formula
C12 H8 O4
Class
ligand
Structures
2
PDB entries
2

Binding sites

NDD in 2 structures; the first of them:

  • 1HAC · Crosslinked haemoglobin · NDD B400 · binds LYS82, LYS82, HIS143
  • 1U4O · Plasmodium falciparum lactate dehydrogenase complexed with 2,6-naphthalenedicarboxylic… · NDD A401 · binds GLY29, MET30, ILE31, VAL138, LEU163, LEU167, HIS195, SER245 and 3 more

Residues it binds most

HIS 2, LEU 1, LYS 1, PRO 1, GLY 1, ILE 1, MET 1, SER 1, TYR 1, VAL 1 (residue and the binding sites it lines).

Found with

  • HEM · Protoporphyrin IX containing Fe
  • CMO · Carbon monoxide
  • MPD · (4S)-2-methyl-2,4-pentanediol

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