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Ligand · N6T

N6T · 2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonoamino)phosphoryl]methyl}phosphoryl]-3,4-dihydrothymidine

N6T, 2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonoamino)phosphoryl]methyl}phosphoryl]-3,4-dihydrothymidine (C11 H20 N3 O12 P3, 479.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site…

Component
N6T
Formula
C11 H20 N3 O12 P3
Class
ligand
Structures
2
PDB entries
1

Binding sites

N6T in 2 structures; the first of them:

  • 4RT2 · Ternary complex crystal structure of DNA polymerase Beta with… · N6T A406 · binds GLY179, SER180, ARG183, SER188, GLY189, ASP190, ASP192, ASP256 and 10 more
  • 4RT2 · Ternary complex crystal structure of DNA polymerase beta with (alpha… · N6T A406 · binds GLY179, SER180, ARG183, SER188, GLY189, ASP190, ASP192, ASP256 and 10 more

Residues it binds most

ASP 2, GLY 2, SER 2, ARG 2, ASN 2, DA 2, DG 2, DOC 2, PHE 2, THR 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • NA · Sodium ion
  • CL · Chloride ion

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