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Ligand · N52

N52 · (2R)-2-(dihydroxymethyl)-2-hydroxy-3-oxobutyl dihydrogen phosphate

N52, (2R)-2-(dihydroxymethyl)-2-hydroxy-3-oxobutyl dihydrogen phosphate (C5 H11 O8 P, 230.1 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it…

Component
N52
Formula
C5 H11 O8 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

N52 in 2 structures; the first of them:

  • 7UF5 · RibB from Vibrio cholera bound with intermediate 2 in the reaction cycle and the products… · N52 A301 · binds ARG38, GLU39, GLU41, ASP43, CYS68, PHE96, LEU141, ARG151 and 6 more
  • 7UF5 · Ribb from vibrio cholera bound with intermediate 2 in the reaction cycle and the products… · N52 A301 · binds ARG38, GLU39, ASP43, CYS68, PHE96, ARG151, GLY153, HIS154 and 3 more

Residues it binds most

GLU 2, ARG 2, LEU 2, ASP 2, CYS 2, GLY 2, HIS 2, PHE 2, THR 2 (residue and the binding sites it lines).

Found with

  • N4O · (2R)-2-hydroxy-3-oxobutyl dihydrogen phosphate
  • MN · Manganese (II) ion
  • FMT · Formic acid

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