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Ligand · N2G

N2G · 2'-deoxy-N-(naphthalen-1-ylmethyl)guanosine 5'-(dihydrogen phosphate)

N2G, 2'-deoxy-N-(naphthalen-1-ylmethyl)guanosine 5'-(dihydrogen phosphate) (C21 H22 N5 O7 P1, 487.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the…

Component
N2G
Formula
C21 H22 N5 O7 P1
Class
ligand
Structures
2
PDB entries
2

Binding sites

N2G in 2 structures; the first of them:

  • 2W8K · Y-family DNA polymerase DPO4 bypassing N2-naphthyl-guanine adduct in syn orientation · N2G T5 · binds VAL32, PHE33, SER34, ARG247, ILE248, VAL249, THR250, LEU293 and 6 more
  • 2W8L · Y-family DNA polymerase DPO4 bypassing N2-naphthyl-guanine adduct in anti orientation · N2G T5 · binds VAL32, SER34, ILE248, VAL249, THR250, ARG332, DC13, DC4 and 1 more

Residues it binds most

DC 2, VAL 2, ARG 2, DG 2, ILE 2, SER 2, THR 2, DA 1, DOC 1, LEU 1 (residue and the binding sites it lines).

Found with

  • DGT · 2'-deoxyguanosine-5'-triphosphate
  • MG · Magnesium ion

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