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Ligand · M3L

M3L · N-trimethyllysine

M3L, N-trimethyllysine (C9 H21 N2 O2 +1, 189.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
M3L
Formula
C9 H21 N2 O2 +1
Class
ligand
Structures
4
PDB entries
3

Binding sites

M3L in 4 structures; the first of them:

  • 2H23 · Structure of Rubisco LSMT bound to Trimethyllysine and AdoHcy · M3L A501 · binds SER221, ARG222, ALA223, PHE224, SER225, ARG226, ALA238, ASP239 and 4 more
  • 4YHY · Crystal structure of 309M3-B in complex with trimethylated Lys · M3L B301 · binds TRP90, TYR97, TRP33, ASP50, TYR59, GLU99, TRP106
  • 2H23 · Structure of rubisco lsmt bound to trimethyllysine and adohcy · M3L A501 · binds SER221, ARG222, ALA223, PHE224, SER225, ARG226, ALA238, ASP239 and 4 more
  • 3ASK · Structure of UHRF1 in complex with histone tail · M3L R9 · binds ASP145, MET148, PHE152, TYR188, TYR191, ASN194, SER301

Residues it binds most

TYR 9, SER 7, ALA 6, ARG 6, ILE 6, ASP 9, PHE 7, TRP 2, GLU 2, HIS 2 (residue and the binding sites it lines).

Found with

  • SAH · S-adenosyl-L-homocysteine
  • ZN · Zinc ion

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