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Ligand · M3E

M3E · 6-phenyl-1~{H}-pyrimidine-2,4-dione

M3E, 6-phenyl-1~{H}-pyrimidine-2,4-dione (C10 H8 N2 O2, 188.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
M3E
Formula
C10 H8 N2 O2
Class
ligand
Structures
2
PDB entries
1

Binding sites

M3E in 2 structures; the first of them:

  • 6SZL · Crystal structure of YTHDC1 with fragment 7 (DHU_DC1_021) · M3E B604 · binds ILE360, LYS361, SER362, ASN367, TRP377, SER378, THR379, ARG404 and 6 more
  • 6SZL · Crystal structure of YTHDC1 with fragment 7 (DHU_DC1_021) · M3E B604 · binds ILE360, LYS361, ASN367, TRP377, SER378, THR379, ARG404, TRP428 and 3 more

Residues it binds most

TRP 2, SER 2, ARG 2, ASN 2, ASP 2, ILE 2, LEU 2, LYS 2, PRO 2, THR 2 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion

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