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Ligand · LSM

LSM · dodecyl 4-O-alpha-D-glucopyranosyl-1-seleno-beta-D-glucopyranoside

LSM, dodecyl 4-O-alpha-D-glucopyranosyl-1-seleno-beta-D-glucopyranoside (C24 H46 O10 Se, 573.6 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the…

Component
LSM
Formula
C24 H46 O10 Se
Class
sugar
Structures
4
PDB entries
2

Binding sites

LSM in 4 structures; the first of them:

  • 3B29 · Human leukotriene C4 synthase in complex with dodecyl-beta-D-selenomaltoside · LSM A203 · binds TRP68
  • 4IL4 · The pentameric ligand-gated ion channel GLIC in complex with Se-DDM · LSM A408 · binds ILE233, ILE236, ALA237, ILE240, LEU241, THR244, ASN245, ILE240 and 2 more
  • 3B29 · Human leukotriene C4 synthase in complex with dodecyl-beta-D- selenomaltoside · LSM A203 · binds TRP68
  • 4IL4 · The pentameric ligand-gated ion channel glic in complex with se-ddm · LSM A408 · binds ILE233, ILE236, ALA237, ILE240, LEU241, THR244, ASN245, ILE240 and 2 more

Residues it binds most

ILE 10, ALA 18, LEU 18, THR 10, ASN 6, GLY 4, PHE 2, TRP 4, TYR 2, VAL 4 (residue and the binding sites it lines).

Found with

  • GSH · Glutathione
  • NA · Sodium ion
  • CL · Chloride ion
  • SO4 · Sulfate ion
  • ACT · Acetate ion

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