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Ligand · LMC

LMC · (2E,4E,6E)-3-methyl-6-(1,3,3-trimethyl-1,3-dihydro-2H-indol-2-ylidene)hexa-2,4-dienal

LMC, (2E,4E,6E)-3-methyl-6-(1,3,3-trimethyl-1,3-dihydro-2H-indol-2-ylidene)hexa-2,4-dienal (C18 H21 N O, 267.4 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (4 PDB entries). Every binding site with its residues within…

Component
LMC
Formula
C18 H21 N O
Class
ligand
Structures
8
PDB entries
4

Binding sites

LMC in 8 structures; the first of them:

  • 3FEP · Crystal structure of the R132K:R111L:L121E:R59W-CRABPII mutant complexed with a synthetic… · LMC A139 · binds PHE15, ALA32, SER37, PRO39, THR56, VAL58, TRP59, LYS132
  • 4QGV · Crystal structure of the R132K:R111L mutant of Cellular Retinoic Acid Binding ProteinII… · LMC A201 · binds PHE15, ALA36, PRO39, VAL41, ILE52, THR54, ARG59, ILE63 and 7 more
  • 4QGW · Crystal structure of the R132K:R111L:L121D mutant of Cellular Retinoic Acid Binding… · LMC A201 · binds ILE9, SER12, PHE15, ALA32, VAL33, ALA34, ALA35, SER37 and 3 more
  • 4QGX · Crystal structure of the R132K:R111L:L121E mutant of Cellular Retinoic Acid Binding… · LMC A201 · binds ILE9, SER12, PHE15, ALA32, VAL33, ALA34, ALA35, SER37 and 3 more
  • 3FEP · Crystal structure of the R132K:R111L:L121E:R59W-crabpii mutant complexed with a synthetic… · LMC A139 · binds PHE15, ALA32, SER37, PRO39, THR56, VAL58, TRP59, LYS132
  • 4QGV · Crystal structure of the R132K:R111L mutant of cellular retinoic acid binding proteinii… · LMC A201 · binds PHE15, ALA36, PRO39, VAL41, ILE52, THR54, ARG59, ILE63 and 7 more
  • 4QGW · Crystal sturcture of the R132K:R111L:L121D mutant of cellular retinoic acid binding… · LMC A201 · binds ILE9, SER12, PHE15, ALA32, VAL33, ALA34, ALA35, SER37 and 3 more
  • 4QGX · Crystal structure of the R132K:R111L:L121E mutant of cellular retinoic acid binding… · LMC A201 · binds ILE9, SER12, PHE15, ALA32, VAL33, ALA34, ALA35, SER37 and 3 more

Residues it binds most

ALA 8, LYS 8, SER 6, ILE 6, PHE 8, PRO 8, VAL 8, LEU 2, THR 4, TRP 4 (residue and the binding sites it lines).

Found with

  • B3P · 2-[3-(2-hydroxy-1,1-dihydroxymethyl-ethylamino)-propylamino]-2-hydroxymethyl-propane-1,3-diol
  • MES · 2-(N-morpholino)-ethanesulfonic acid

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