Ligand · LDC

LDC · 4-amino-1-(2-deoxy-beta-L-erythro-pentofuranosyl)pyrimidin-2(1H)-one

LDC, 4-amino-1-(2-deoxy-beta-L-erythro-pentofuranosyl)pyrimidin-2(1H)-one (C9 H13 N3 O4, 227.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues…

Component: LDC
Formula: C9 H13 N3 O4
Class: ligand
Structures: 2
PDB entries: 1

Binding sites

LDC in 2 structures; the first of them:

2NO7 · C4S dCK variant of dCK in complex with L-dC+ADP · LDC A401 · binds ILE30, GLU53, VAL55, TRP58, LEU82, MET85, TYR86, PHE96 and 9 more
2NO7 · C4S dck variant of dck in complex with L-DC+ADP · LDC A401 · binds ILE30, GLU53, VAL55, TRP58, LEU82, MET85, TYR86, PHE96 and 9 more

Residues it binds most

ARG 4, GLU 4, PHE 4, TYR 4, ALA 4, ASP 4, GLN 4, ILE 4, LEU 4, MET 4 (residue and the binding sites it lines).

Found with

ADP · Adenosine-5'-diphosphate

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