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Ligand · LCY

LCY · 1-methylpyrrolidine-2,5-dione

LCY, 1-methylpyrrolidine-2,5-dione (C5 H7 N O2, 113.1 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
LCY
Formula
C5 H7 N O2
Class
ligand
Structures
6
PDB entries
3

Binding sites

LCY in 6 structures; the first of them:

  • 3A2G · Crystal Structure of K102C-Myoglobin conjugated with Fluorescein · LCY A200 · binds PRO100, CYS102, TYR103, GLY153
  • 3QW1 · Crystal structure of the Zn-RIDC1 complex stabilized by BMH crosslinks · LCY A501 · binds ALA23, CYS82
  • 4R0O · Crystal structure of PEGylated plastocyanin at 4.2 A resolution · LCY A202 · binds ASP44, CYS45, LYS46, LYS53
  • 3A2G · Crystal structure of K102C-myoglobin conjugated with fluorescein · LCY A200 · binds PRO100, CYS102, TYR103, GLY153
  • 3QW1 · Crystal structure of the zn-RIDC1 complex stabilized by bmh crosslinks · LCY A501 · binds ALA23, CYS82
  • 4R0O · Crystal structure of pegylated plastocyanin at 4.2 a resolution · LCY A202 · binds ASP44, CYS45, LYS46, LYS53

Residues it binds most

CYS 18, LYS 10, ASN 6, ASP 6, GLU 6, ALA 2, GLY 2, PRO 2, TYR 2 (residue and the binding sites it lines).

Found with

  • HEM · Protoporphyrin IX containing Fe
  • CU · Copper (II) ion
  • ZN · Zinc ion
  • SO4 · Sulfate ion
  • GOL · Glycerol

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