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Ligand · LCV

LCV · (2~{S})-1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R}, 5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethoxy]-1-oxidanylidene-propane-2-sulfonic acid

LCV, (2~{S})-1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R}, 5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethoxy]…

Component
LCV
Formula
C24 H40 N7 O21 P3 S
Class
ligand
Structures
3
PDB entries
2

Binding sites

LCV in 3 structures; the first of them:

  • 6X7P · LnmK in complex with 2-sulfonate-propionyl-oxa(dethia)-CoA · LCV A402 · binds TRP39, TYR62, LEU63, ALA64, PHE65, TYR66, ARG140, VAL142 and 12 more
  • 6N96 · Methylmalonyl-CoA decarboxylase in complex with 2-sulfonate-propionyl- OXA(DETHIA)-CoA · LCV A301 · binds LYS24, LEU25, LYS60, ALA64, GLY65, HIS66, ASP67, ILE68 and 13 more
  • 6X7P · Lnmk in complex with 2-sulfonate-propionyl-OXA(DETHIA)-CoA · LCV A402 · binds TRP39, LEU63, ALA64, PHE65, TYR66, ARG140, LEU153, LYS155 and 10 more

Residues it binds most

LEU 8, GLY 8, TYR 8, LYS 9, HIS 8, PHE 10, TRP 10, VAL 9, ALA 8, PRO 8 (residue and the binding sites it lines).

Found with

  • SO5 · (2~{R})-1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R}, 5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethoxy]-1-oxidanylidene-propane-2-sulfonic acid
  • SO4 · Sulfate ion
  • IMD · Imidazole

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