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Ligand · LBY

LBY · N~6~-(tert-butoxycarbonyl)-L-lysine

LBY, N~6~-(tert-butoxycarbonyl)-L-lysine (C11 H22 N2 O4, 246.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
LBY
Formula
C11 H22 N2 O4
Class
ligand
Structures
4
PDB entries
2

Binding sites

LBY in 4 structures; the first of them:

  • 2ZIN · Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with… · LBY A601 · binds MET300, ALA302, LEU305, TYR306, LEU309, ASN346, PHE347, CYS348 and 6 more
  • 3VQY · Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with… · LBY A502 · binds MET276, MET300, ALA302, TYR306, MET344, ASN346, SER399, ALA400 and 6 more
  • 2ZIN · Crystal structure of the catalytic domain of pyrrolysyl- tRNA synthetase in complex with… · LBY A601 · binds MET300, ALA302, LEU305, TYR306, LEU309, ASN346, PHE347, CYS348 and 6 more
  • 3VQY · Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with… · LBY A502 · binds MET276, MET300, ALA302, TYR306, MET344, ASN346, SER399, ALA400 and 6 more

Residues it binds most

ALA 4, GLY 4, MET 4, ASN 4, LEU 2, SER 4, TRP 4, TYR 4, VAL 4, CYS 2 (residue and the binding sites it lines).

Found with

  • ANP · Phosphoaminophosphonic acid-adenylate ester
  • MG · Magnesium ion
  • EDO · 1,2-ethanediol

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