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Ligand · L60

L60 · 1,3-diazinan-2-one

L60, 1,3-diazinan-2-one (C4 H8 N2 O, 100.1 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
L60
Formula
C4 H8 N2 O
Class
ligand
Structures
4
PDB entries
2

Binding sites

L60 in 4 structures; the first of them:

  • 5NOU · Structure of cyclophilin A in complex with hexahydropyrimidin-2-one · L60 A201 · binds ARG55, ILE57, PHE60, MET61, GLN63, PHE113, LEU122, HIS126
  • 6NFL · Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B with loop 7 from APOBEC3G… · L60 A401 · binds ARG210, ARG211, ARG212, GLN213, THR214, ASN240, HIS253, TRP281 and 1 more
  • 5NOU · Structure of cyclophilin a in complex with hexahydropyrimidin-2-one · L60 A201 · binds ARG55, PHE60, MET61, GLN63, PHE113, LEU122
  • 6NFL · Crystal structure of the cancer genomic DNA mutator APOBEC3B with loop 7 from APOBEC3G… · L60 A401 · binds ARG210, ARG211, ARG212, GLN213, THR214, ASN240, HIS253, TRP281 and 1 more

Residues it binds most

ARG 4, PHE 6, GLN 4, LEU 4, LYS 4, THR 4, HIS 3, ILE 3, ASN 2, MET 2 (residue and the binding sites it lines).

Found with

  • 71O · pyrimidin-2-ol
  • CL · Chloride ion
  • EDO · 1,2-ethanediol
  • TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol

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