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Ligand · KSG

KSG · (1S,2R,3S,4R,5S,6S)-2,3,4,5,6-pentahydroxycyclohexyl 2-amino-4-{[carboxy(imino)methyl]amino}-2,3,4,6-tetradeoxy-alpha-D-arabino-hexopyranoside

KSG, (1S,2R,3S,4R,5S,6S)-2,3,4,5,6-pentahydroxycyclohexyl 2-amino-4-{[carboxy(imino)methyl]amino}-2,3,4,6-tetradeoxy-alpha-D-arabino-hexopyranoside (C14 H25 N3 O9, 379.4 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (3…

Component
KSG
Formula
C14 H25 N3 O9
Class
ligand
Structures
4
PDB entries
3

Binding sites

KSG in 4 structures; the first of them:

  • 2HHH · Crystal structure of kasugamycin bound to the 30S ribosomal subunit · KSG A1523 · binds A776, A778, C779, G904, U1476, A1477, G1482, G1483 and 1 more
  • 4V4H · Crystal structure of the bacterial ribosome from Escherichia coli in complex with the… · KSG AA1601 · binds A792, A794, G926, U1498, A1499, G1505, U1506
  • 8CEP · Kasugamycin bound to the 30S body · KSG A1603 · binds G791, A792, A794, C795, G926, UR31498, A1499, G1504 and 3 more
  • 2HHH · Crystal structure of kasugamycin bound to the 30S ribosomal subunit · KSG A1523 · binds A776, A778, C779, G904, U1476, A1477, G1482, G1483 and 1 more

Residues it binds most

G 7, A 5, U 7, GLY 2, C 3, DPP 1, UR3 1 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • K · Potassium ion

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