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Ligand · KDR

KDR · prop-2-en-1-yl 3-deoxy-alpha-D-manno-octos-2-ulopyranoside

KDR, prop-2-en-1-yl 3-deoxy-alpha-D-manno-octos-2-ulopyranoside (C11 H18 O7, 262.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
KDR
Formula
C11 H18 O7
Class
sugar
Structures
2
PDB entries
1

Binding sites

KDR in 2 structures; the first of them:

  • 2R1Y · Crystal structure of S25-2 Fab in complex with Kdo analogues · KDR C1 · binds ARG30C, TYR33, ARG52, ASN52D, HIS96
  • 2R1Y · Crystal structure of S25-2 Fab in complex with kdo analogues · KDR C1 · binds ARG30C, TYR33, ARG52, ASN52D, HIS96

Residues it binds most

ARG 2, ASN 2, HIS 2, TYR 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • ZN · Zinc ion
  • KDO · 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid

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