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Ligand · KDP

KDP · 2-keto-deoxy-galactose

KDP, 2-keto-deoxy-galactose (C6 H11 O9 P, 258.1 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
KDP
Formula
C6 H11 O9 P
Class
ligand
Structures
3
PDB entries
2

Binding sites

KDP in 3 structures; the first of them:

  • 2V82 · KDPGal complexed to KDPGal · KDP A1207 · binds ILE12, ARG14, GLU37, GLY65, THR66, VAL85, THR86, PRO87 and 8 more
  • 8JU9 · Molecular mechanism of the one-component regulator RccR on bacterial metabolism and… · KDP A701 · binds PHE136, GLY137, ALA138, SER139, ILE182, SER183, GLN184, SER185 and 6 more
  • 2V82 · Kdpgal complexed to kdpgal · KDP A1207 · binds ILE12, ARG14, GLU37, GLY65, THR66, VAL85, THR86, PRO87 and 8 more

Residues it binds most

GLY 3, SER 3, THR 3, VAL 2, ILE 3, PHE 3, PRO 3, ARG 2, GLU 2, LEU 2 (residue and the binding sites it lines).

Found with

  • PEG · Di(hydroxyethyl)ether
  • PG5 · 1-methoxy-2-[2-(2-methoxy-ethoxy]-ethane

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