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Ligand · KDN

KDN · Deamino-beta-neuraminic acid

KDN, Deamino-beta-neuraminic acid (C9 H16 O9, 268.2 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
KDN
Formula
C9 H16 O9
Class
sugar
Structures
1
PDB entries
1

Binding sites

KDN in 1 structure; the first of them:

  • 6S0F · Crystal structure of an inverting family GH156 exosialidase from uncultured bacterium PG7… · KDN A610 · binds ASP14, ASN15, SER16, CYS53, TRP95, ARG129, HIS134, ARG202 and 3 more

Residues it binds most

ARG 2, ASN 2, TRP 2, ASP 2, CYS 2, HIS 2, SER 2, THR 2, PHE 1 (residue and the binding sites it lines).

Found with

  • SCN · Thiocyanate ion
  • ACT · Acetate ion
  • GOL · Glycerol
  • TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol

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