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Ligand · KDD

KDD · 2,6-anhydro-3,5-dideoxy-D-ribo-oct-2-enonic acid

KDD, 2,6-anhydro-3,5-dideoxy-D-ribo-oct-2-enonic acid (C8 H12 O6, 204.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
KDD
Formula
C8 H12 O6
Class
sugar
Structures
2
PDB entries
1

Binding sites

KDD in 2 structures; the first of them:

  • 2R1X · Crystal structure of S25-2 Fab in complex with Kdo analogues · KDD C2 · binds ARG30C
  • 2R1X · Crystal structure of S25-2 Fab in complex with kdo analogues · KDD C2 · binds ARG30C

Residues it binds most

ARG 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • ZN · Zinc ion
  • KDA · prop-2-en-1-yl 3-deoxy-alpha-D-manno-oct-2-ulopyranosidonic acid

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