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Ligand · KD3

KD3 · 3-deoxy-beta-D-manno-oct-2-ulopyranosonic acid

KD3, 3-deoxy-beta-D-manno-oct-2-ulopyranosonic acid (C8 H14 O8, 238.2 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
KD3
Formula
C8 H14 O8
Class
ligand
Structures
1
PDB entries
1

Binding sites

KD3 in 1 structure; the first of them:

  • 8FUX · KpsC D160C ternary complex · KD3 A401 · binds SER6, GLY8, ILE9, ILE12, TRP42, ARG45, SER47

Residues it binds most

ARG 4, ILE 2, SER 2, TRP 4, GLY 3, ASP 2, GLU 2, TYR 2, LYS 1, VAL 1 (residue and the binding sites it lines).

Found with

  • C5P · Cytidine-5'-monophosphate
  • PXV · N-(8-hydroxyoctyl)-4-methoxybenzamide
  • KDO · 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid
  • CL · Chloride ion
  • PO4 · Phosphate ion

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