Ligand · JLS

JLS · (15Z)-N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]tetracos-15-enamide

JLS, (15Z)-N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]tetracos-15-enamide (C48 H93 N O9, 828.2 g/mol), in the MolNFT structures on GenesisL1: bound in 7 records (4 PDB entries). Every binding site with its…

Component: JLS
Formula: C48 H93 N O9
Class: ligand
Structures: 7
PDB entries: 4

Binding sites

JLS in 7 structures; the first of them:

4LHU · Crystal Structure of 9C2 TCR bound to CD1d · JLS A308 · binds LEU10, CYS12, LEU13, GLN14, GLY28, LEU29, ALA30, HIS38 and 36 more
4WW2 · Crystal structure of human TCR Alpha Chain-TRAV21-TRAJ8, Beta Chain-TRBV7-8… · JLS C303 · binds GLN112, TYR55, GLN57, ARG109, LEU111, LEU10, CYS12, LEU13 and 40 more
4WWK · Crystal structure of human TCR Alpha Chain-TRAV12-3, Beta Chain-TRBV6-5… · JLS C303 · binds GLN112, LEU10, CYS12, LEU13, GLN14, GLY28, LEU29, ALA30 and 37 more
4LHU · Crystal structure of 9C2 TCR bound to CD1D · JLS A308 · binds LEU10, CYS12, LEU13, GLN14, GLY28, LEU29, ALA30, HIS38 and 36 more
4WO4 · The molecular bases of DELTA/ALPHA beta T cell-mediated antigen recognition. · JLS A310 · binds CYS12, LEU13, GLN14, GLY28, LEU29, ALA30, HIS38, TRP40 and 32 more
4WW2 · Crystal structure of human TCR alpha chain-TRAV21-TRAJ8, beta chain- TRBV7-8… · JLS C303 · binds GLN112, TYR55, GLN57, ARG109, LEU111, LEU10, CYS12, LEU13 and 40 more
4WWK · Crystal structure of human TCR alpha chain-TRAV12-3, beta chain-TRBV6- 5… · JLS C303 · binds GLN112, LEU10, CYS12, LEU13, GLN14, GLY28, LEU29, ALA30 and 37 more

Residues it binds most

LEU 7, VAL 7, PHE 7, TRP 7, ALA 7, THR 7, ILE 7, ASP 7, CYS 7, GLN 7 (residue and the binding sites it lines).

Found with

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
BMA · beta-D-mannopyranose
MG · Magnesium ion
CL · Chloride ion
FUC · alpha-L-fucopyranose

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