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Ligand · JD2

JD2 · 5-azanyl-3-[1-(pyridin-2-ylmethyl)indol-6-yl]-1~{H}-pyrazole-4-carbonitrile

JD2, 5-azanyl-3-[1-(pyridin-2-ylmethyl)indol-6-yl]-1~{H}-pyrazole-4-carbonitrile (C18 H14 N6, 314.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the…

Component
JD2
Formula
C18 H14 N6
Class
ligand
Structures
2
PDB entries
1

Binding sites

JD2 in 2 structures; the first of them:

  • 6QQY · Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus… · JD2 A301 · binds PRO83, THR84, PRO85, GLY109, ARG110, TYR111, GLU112, GLY113 and 13 more
  • 6QQY · Crystal structure of trmd, a tRNA-(N1G37) methyltransferase, from mycobacterium abscessus… · JD2 A301 · binds PRO83, THR84, PRO85, GLY109, ARG110, TYR111, GLU112, GLY113 and 12 more

Residues it binds most

GLY 4, GLU 4, PRO 4, TYR 4, VAL 4, ARG 4, ALA 4, ASN 4, ILE 4, LEU 4 (residue and the binding sites it lines).

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