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Ligand · IRN

IRN · 1-(5-O-phosphono-beta-D-ribofuranosyl)-1H-imidazole

IRN, 1-(5-O-phosphono-beta-D-ribofuranosyl)-1H-imidazole (C8 H13 N2 O7 P, 280.2 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
IRN
Formula
C8 H13 N2 O7 P
Class
ligand
Structures
8
PDB entries
4

Binding sites

IRN in 8 structures; the first of them:

  • 3EPN · Crystal structure of Caulobacter crescentus ThiC complexed with imidazole ribonucleotide · IRN A1001 · binds ASN217, ASN219, MET248, LEU250, VAL274, TYR277, THR311, HIS313 and 12 more
  • 4S25 · Crystal structure of Arabidopsis thaliana ThiC with bound imidazole ribonucleotide… · IRN A702 · binds ASN228, MET257, LEU259, VAL283, TYR286, THR320, HIS322, SER342 and 10 more
  • 4S26 · Crystal structure of Arabidopsis thaliana ThiC with bound imidazole ribonucleotide… · IRN A702 · binds ASN228, MET257, LEU259, VAL283, TYR286, THR320, HIS322, VAL341 and 11 more
  • 4S29 · Crystal structure of Arabidopsis thaliana ThiC with bound imidazole ribonucleotide and Fe · IRN A701 · binds ASN228, MET257, LEU259, VAL283, TYR286, THR320, HIS322, SER342 and 10 more
  • 3EPN · Crystal structure of caulobacter crescentus thic complexed with imidazole ribonucleotide · IRN A1001 · binds ASN217, ASN219, MET248, LEU250, VAL274, TYR277, THR311, HIS313 and 12 more
  • 4S25 · Crystal structure of arabidopsis thaliana thic with bound imidazole ribonucleotide… · IRN A702 · binds ASN228, MET257, LEU259, VAL283, TYR286, THR320, HIS322, SER342 and 10 more
  • 4S26 · Crystal structure of arabidopsis thaliana thic with bound imidazole ribonucleotide… · IRN A702 · binds ASN228, MET257, LEU259, VAL283, TYR286, THR320, HIS322, VAL341 and 11 more
  • 4S29 · Crystal structure of arabidopsis thaliana thic with bound imidazole ribonucleotide and fe · IRN A701 · binds ASN228, MET257, LEU259, VAL283, TYR286, THR320, HIS322, SER342 and 10 more

Residues it binds most

ARG 12, GLY 12, LEU 12, THR 12, TYR 12, VAL 12, ASN 12, ASP 12, CYS 12, GLU 12 (residue and the binding sites it lines).

Found with

  • SAH · S-adenosyl-L-homocysteine
  • SF4 · Iron/sulfur cluster
  • ZN · Zinc ion
  • CL · Chloride ion
  • BU1 · 1,4-butanediol
  • FE2 · Fe (II) ion

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