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Ligand · IP1

IP1 · Isopenicillin N

IP1, Isopenicillin N (C14 H21 N3 O6 S, 359.4 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
IP1
Formula
C14 H21 N3 O6 S
Class
ligand
Structures
6
PDB entries
4

Binding sites

IP1 in 6 structures; the first of them:

  • 6ZAO · Isopenicillin N synthase structure in complex with Fe and IPN exposed to dioxygen. · IP1 A405 · binds ARG87, TYR91, CYS104, SER183, VAL185, ILE187, TYR189, PHE211 and 12 more
  • 6ZAQ · Room temperature XFEL Isopenicillin N synthase structure in complex with Fe and IPN after… · IP1 A403 · binds ARG87, TYR91, CYS104, SER183, VAL185, ILE187, TYR189, PHE211 and 11 more
  • 8P46 · IPNS variant N252D in complex with Fe and IPN after O2 exposure · IP1 A406 · binds ARG87, TYR91, CYS104, SER183, VAL185, ILE187, TYR189, PHE211 and 12 more
  • 6Y0P · Isopenicillin N synthase in complex with ipn and fe using ft-ssx methods · IP1 A402 · binds ARG87, TYR91, CYS104, SER183, ILE187, TYR189, PHE211, HIS214 and 9 more
  • 6ZAO · Isopenicillin N synthase structure in complex with fe and ipn exposed to dioxygen. · IP1 A405 · binds ARG87, TYR91, CYS104, SER183, ILE187, TYR189, PHE211, HIS214 and 8 more
  • 6ZAQ · Room temperature xfel isopenicillin N synthase structure in complex with fe and ipn after… · IP1 A403 · binds ARG87, TYR91, CYS104, SER183, ILE187, TYR189, PHE211, HIS214 and 7 more

Residues it binds most

LEU 6, PHE 6, SER 6, TYR 6, VAL 6, HIS 6, ARG 6, CYS 6, GLN 6, ILE 6 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion
  • FE · Fe (III) ion
  • FE2 · Fe (II) ion

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