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Ligand · IK2

IK2 · 4'-deoxy-4'-acetylyamino-pyridoxal-5'-phosphate

IK2, 4'-deoxy-4'-acetylyamino-pyridoxal-5'-phosphate (C10 H15 N2 O8 P, 322.2 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (5 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most…

Component
IK2
Formula
C10 H15 N2 O8 P
Class
ligand
Structures
6
PDB entries
5

Binding sites

IK2 in 6 structures; the first of them:

  • 1OXO · Aspartate aminotransferase, H-asp complex, open conformation · IK2 A411 · binds SER107, GLY108, THR109, LEU112, TRP140, HIS143, HIS189, ASN194 and 10 more
  • 1OXP · Aspartate aminotransferase, H-asp complex, closed conformation · IK2 A411 · binds ILE17, LEU18, VAL37, SER107, GLY108, THR109, LEU112, TRP140 and 10 more
  • 1SFF · Structure of gamma-aminobutyrate aminotransferase complex with aminooxyacetate · IK2 A450 · binds ILE50, THR110, GLY111, SER112, VAL115, TYR138, HIS139, GLY140 and 13 more
  • 7MCQ · Crystal structure of Staphylococcus aureus Cystathionine gamma lyase, AOAA-bound enzyme… · IK2 A401 · binds SER74, GLY75, VAL76, ILE79, TYR99, GLU142, ASP171, THR173 and 11 more
  • 7QGT · Crystal structure of human cystathionine beta-synthase (delta516-525) in complex with… · IK2 B1001 · binds LYS119, THR146, SER147, GLY148, ASN149, THR150, GLN222, SER254 and 14 more
  • 7MCQ · Crystal structure of staphylococcus aureus cystathionine gamma lyase, aoaa-bound enzyme… · IK2 A401 · binds SER74, GLY75, VAL76, ILE79, TYR99, GLU142, ASP171, THR173 and 9 more

Residues it binds most

SER 12, TYR 12, GLY 12, THR 12, GLU 9, VAL 10, ARG 11, ASP 12, LYS 12, ALA 7 (residue and the binding sites it lines).

Found with

  • NA · Sodium ion
  • GOL · Glycerol
  • HEM · Protoporphyrin IX containing Fe
  • PLP · Pyridoxal-5'-phosphate
  • SO4 · Sulfate ion
  • EDO · 1,2-ethanediol

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