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Ligand · I5Z

I5Z · 6-cyclopropyl-1H-pyrimidine-2,4-dione

I5Z, 6-cyclopropyl-1H-pyrimidine-2,4-dione (C7 H8 N2 O2, 152.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
I5Z
Formula
C7 H8 N2 O2
Class
ligand
Structures
2
PDB entries
1

Binding sites

I5Z in 2 structures; the first of them:

  • 7R5W · Crystal structure of YTHDF2 with compound YLI_DF_029 · I5Z A604 · binds LYS416, SER417, TYR418, SER419, ASP422, TRP432, CYS433, SER434 and 4 more
  • 7R5W · Crystal structure of YTHDF2 with compound YLI_DF_029 · I5Z A604 · binds LYS416, SER417, TYR418, SER419, ASP422, TRP432, CYS433, SER434 and 3 more

Residues it binds most

SER 4, TRP 4, ASP 4, CYS 4, LYS 4, TYR 4, THR 2 (residue and the binding sites it lines).

Found with

  • CL · Chloride ion
  • SO4 · Sulfate ion
  • GOL · Glycerol

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