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Ligand · I2A

I2A · Hydroxocobalamin

I2A, Hydroxocobalamin (C62 H88 Co N13 O15 P, 1345.3 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with…

Component
I2A
Formula
C62 H88 Co N13 O15 P
Class
ligand
Structures
3
PDB entries
3

Binding sites

I2A in 3 structures; the first of them:

  • 4FRG · Crystal structure of the cobalamin riboswitch aptamer domain · I2A B101 · binds G19, A20, A21, U44, G45, U54, A55, A70 and 2 more
  • 4FRN · Crystal structure of the cobalamin riboswitch regulatory element · I2A A201 · binds G19, A20, A21, A43, U44, U45, A51, U52 and 7 more
  • 8BB0 · The surface-exposed lipo-protein of BtuG2 in complex with hydroxycobalamin. · I2A A426 · binds GLU10, GLY11, ASN12, PHE13, TYR15, VAL46, GLN48, ASN62 and 15 more

Residues it binds most

A 4, G 4, TYR 2, U 4, ASN 2, C 4, GLN 2, TRP 2, ILE 2, SER 2 (residue and the binding sites it lines).

Found with

  • BA · Barium ion
  • IR3 · Iridium (III) ion
  • MG · Magnesium ion
  • NA · Sodium ion
  • SCN · Thiocyanate ion
  • ACT · Acetate ion
  • GOL · Glycerol
  • PEG · Di(hydroxyethyl)ether
  • PGE · Triethylene glycol

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