GL1X · GenesisL1 explorer

Ligand · HZL

HZL · [(2S)-3-[2-[(E)-[(2E,4E,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohexen-1-yl)nona-2,4,6,8-tetraenylidene]amino]ethoxy-oxidanyl-phosphoryl]oxy-2-[(Z)-octadec-9-enoyl]oxy-propyl] (Z)-octadec-9-enoate

HZL, [(2S)-3-[2-[(E)-[(2E,4E,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohexen-1-yl)nona-2,4,6,8-tetraenylidene]amino]ethoxy-oxidanyl-phosphoryl]oxy-2-[(Z)-octadec-9-enoyl]oxy-propyl] (Z)-octadec-9-enoate (C61 H104 N O8 P, 1010.5 g/mol), in…

Component
HZL
Formula
C61 H104 N O8 P
Class
ligand
Structures
4
PDB entries
2

Binding sites

HZL in 4 structures; the first of them:

  • 7E7O · Cryo-EM structure of human ABCA4 in NRPE-bound state · HZL A2311 · binds LEU42, TRP339, TYR340, TYR345, PHE348, ARG587, TYR588, ILE649 and 12 more
  • 7M1Q · Human ABCA4 structure in complex with N-ret-PE · HZL A2304 · binds TRP41, LEU42, ALA45, ASN46, TRP339, TYR340, GLU341, TYR345 and 16 more
  • 7E7O · Cryo-EM structure of human ABCA4 in nrpe-bound state · HZL A2311 · binds TYR340, TYR345, ARG587, TYR588, ILE649, ILE650, ARG653, ILE657 and 4 more
  • 7M1Q · Human ABCA4 structure in complex with N-ret-pe · HZL A2304 · binds LEU42, ASN46, TYR340, TYR345, ARG587, TYR588, ILE649, ARG653 and 5 more

Residues it binds most

LEU 4, TYR 4, PHE 4, ILE 4, ARG 4, SER 4, VAL 2, TRP 2, ASN 2, ALA 1 (residue and the binding sites it lines).

Found with

  • BMA · beta-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine
  • MG · Magnesium ion
  • MAN · alpha-D-mannopyranose

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