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Ligand · HYN

HYN · imidazolidine-2,4-dione

HYN, imidazolidine-2,4-dione (C3 H4 N2 O2, 100.1 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
HYN
Formula
C3 H4 N2 O2
Class
ligand
Structures
5
PDB entries
3

Binding sites

HYN in 5 structures; the first of them:

  • 5OH7 · Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with… · HYN A202 · binds ASN50, PRO51, PHE77, SER78, TRP79, TRP85, TRP99, TYR101
  • 5S46 · PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 Nsp3 macrodomain in… · HYN A401 · binds ALA21, ASP22, ILE23, GLY48, VAL49, ALA52, PHE156
  • 5OH7 · Cereblon isoform 4 from magnetospirillum gryphiswaldense in complex with… · HYN A202 · binds ASN50, PRO51, PHE77, SER78, TRP79, TRP85, TRP99, TYR101
  • 5S46 · Pandda analysis group deposition -- crystal structure of SARS-cov-2 NSP3 macrodomain in… · HYN A401 · binds ALA21, ASP22, ILE23, GLY48, VAL49, ALA52, PHE156
  • 6TX9 · Crystal structure of human FKBP51 FK1 domain A19T mutant in complex with hydantoin · HYN A201 · binds VAL86, ILE87, TYR113

Residues it binds most

TRP 4, PHE 6, TYR 5, ALA 2, ASN 4, PRO 4, SER 4, ILE 3, VAL 3, ASP 2 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion
  • NA · Sodium ion

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