GL1X · GenesisL1 explorer

Ligand · HP7

HP7 · (2S,3S,4R,5R,6R)-5-acetamido-6-[[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-3,4-dihydroxy-oxane-2-carboxylic acid

HP7, (2S,3S,4R,5R,6R)-5-acetamido-6-[[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-3,4-dihydroxy-oxane-2-carboxylic acid (C17 H25 N3 O18 P2, 621.3 g/mol), in the…

Component
HP7
Formula
C17 H25 N3 O18 P2
Class
ligand
Structures
6
PDB entries
3

Binding sites

HP7 in 6 structures; the first of them:

  • 3OA0 · Crystal structure of the WlbA (WbpB) Dehydrogenase from Thermus thermophilus in complex… · HP7 A312 · binds TYR12, ARG16, LYS101, GLN129, TYR156, THR158, ARG160, TRP163 and 10 more
  • 3Q2I · Crystal structure of the WlbA dehydrognase from Chromobactrium violaceum in complex with… · HP7 A550 · binds LYS104, GLN132, ASN133, TRP163, THR164, ARG165, PRO166, TYR169 and 7 more
  • 3Q2K · Crystal structure of the WlbA dehydrogenase from Bordetella pertussis in complex with… · HP7 A550 · binds ARG20, LYS103, GLN131, ASN132, TRP162, THR163, ARG164, PRO165 and 8 more
  • 3OA0 · Crystal structure of the wlba (wbpb) dehydrogenase from thermus thermophilus in complex… · HP7 A312 · binds TYR12, ARG16, LYS101, GLN129, TYR156, THR158, ARG160, TRP163 and 10 more
  • 3Q2I · Crystal structure of the wlba dehydrognase from chromobactrium violaceum in complex with… · HP7 A550 · binds LYS104, GLN132, ASN133, TRP163, THR164, ARG165, PRO166, TYR169 and 7 more
  • 3Q2K · Crystal structure of the wlba dehydrogenase from bordetella pertussis in complex with… · HP7 A550 · binds ARG20, LYS103, GLN131, ASN132, TRP162, THR163, ARG164, PRO165 and 8 more

Residues it binds most

ARG 42, ASN 42, GLN 42, TYR 42, LYS 42, THR 42, HIS 42, TRP 42, PRO 34, GLY 14 (residue and the binding sites it lines).

Found with

  • NAI · 1,4-dihydronicotinamide adenine dinucleotide
  • CL · Chloride ion
  • NAD · Nicotinamide-adenine-dinucleotide
  • NA · Sodium ion

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