GL1X · GenesisL1 explorer

Ligand · HKO

HKO · N-[(1R,2R,3R,4S,5R)-4-[(2R,3R,6S)-6-(aminomethyl)-3-azanyl-oxan-2-yl]oxy-5-azanyl-2-[[(3S,4S,5S,6R)-5-(methylamino)-4,6-bis(oxidanyl)-2-oxabicyclo[4.1.0]heptan-3-yl]oxy]-3-oxidanyl-cyclohexyl]pyridine-3-sulfonamide

HKO, N-[(1R,2R,3R,4S,5R)-4-[(2R,3R,6S)-6-(aminomethyl)-3-azanyl-oxan-2-yl]oxy-5-azanyl-2-[[(3S,4S,5S,6R)-5-(methylamino)-4,6-bis(oxidanyl)-2-oxabicyclo[4.1.0]heptan-3-yl]oxy]-3-oxidanyl-cyclohexyl]pyridine-3-sulfonamide (C24 H40 N6 O9 S…

Component
HKO
Formula
C24 H40 N6 O9 S
Class
ligand
Structures
2
PDB entries
1

Binding sites

HKO in 2 structures; the first of them:

  • 7DUI · Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and… · HKO A1601 · binds 5MC1404, G1405, U1406, 5MC1407, A1408, C1409, G1491, A1493 and 4 more
  • 7DUI · Crystal structure of the thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and… · HKO A1601 · binds 5MC1404, G1405, U1406, 5MC1407, A1408, C1409, G1491, A1493 and 4 more

Residues it binds most

G 2, 5MC 2, A 2, C 2, U 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • ZN · Zinc ion

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