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Ligand · GPD

GPD · (2R,3S,5S,6R)-5-amino-3-hydroxy-6-methyl-oxan-2-yl

GPD, (2R,3S,5S,6R)-5-amino-3-hydroxy-6-methyl-oxan-2-yl (C16 H26 N6 O13 P2, 572.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
GPD
Formula
C16 H26 N6 O13 P2
Class
ligand
Structures
2
PDB entries
1

Binding sites

GPD in 2 structures; the first of them:

  • 3DR7 · GDP-perosamine synthase from Caulobacter crescentus with bound GDP-3-deoxyperosamine · GPD A500 · binds SER8, VAL9, ALA10, ALA11, PRO12, TYR86, GLU160, PHE183 and 14 more
  • 3DR7 · GDP-perosamine synthase from caulobacter crescentus with bound GDP-3- deoxyperosamine · GPD A500 · binds SER8, VAL9, ALA10, ALA11, PRO12, TYR86, GLU160, PHE183 and 14 more

Residues it binds most

ALA 8, ARG 8, PHE 8, SER 8, TRP 8, TYR 8, GLU 8, VAL 8, ASN 8, GLY 8 (residue and the binding sites it lines).

Found with

  • EDO · 1,2-ethanediol

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