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Ligand · GNL

GNL · (3aR,5R,6R,7R,7aR)-5-(hydroxymethyl)-2-methyl-5,6,7,7a-tetrahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol

GNL, (3aR,5R,6R,7R,7aR)-5-(hydroxymethyl)-2-methyl-5,6,7,7a-tetrahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol (C8 H13 N O4 S, 219.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (3 PDB entries). Every binding site with…

Component
GNL
Formula
C8 H13 N O4 S
Class
ligand
Structures
4
PDB entries
3

Binding sites

GNL in 4 structures; the first of them:

  • 5L7V · Crystal Structure of BvGH123 with bond transition state analog Galthiazoline. · GNL A601 · binds TRP206, TRP253, GLN256, TRP306, ASP361, GLU362, ALA387, TYR427 and 6 more
  • 8K2K · Crystal structure of Group 3 Oligosaccharide/Monosaccharide-releasing… · GNL A601 · binds TRP204, ASP353, GLU354, ALA382, TYR422, CYS424, ILE425, LEU459 and 4 more
  • 8K2M · Crystal structure of Group 4 Monosaccharide-releasing beta-N-acetylgalactosaminidase… · GNL A601 · binds TRP196, ASP244, GLN297, TRP298, ASP359, GLU360, ALA388, TYR424 and 6 more
  • 5L7V · Crystal structure of BVGH123 with bond transition state analog galthiazoline. · GNL A601 · binds GLN256, TRP306, ASP361, GLU362, ALA387, TYR427, CYS429, CYS430 and 3 more

Residues it binds most

TRP 6, ASP 6, CYS 6, ALA 6, GLU 6, TYR 6, GLN 5, LEU 4, HIS 1, ILE 1 (residue and the binding sites it lines).

Found with

  • BR · Bromide ion
  • CL · Chloride ion
  • SO4 · Sulfate ion
  • GOL · Glycerol

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