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Ligand · GM3

GM3 · N-{1-[(hexopyranosyloxy)methyl]-2-hydroxynonadecyl}tetracosanamide

GM3, N-{1-[(hexopyranosyloxy)methyl]-2-hydroxynonadecyl}tetracosanamide (C50 H99 N O8, 842.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues…

Component
GM3
Formula
C50 H99 N O8
Class
ligand
Structures
2
PDB entries
1

Binding sites

GM3 in 2 structures; the first of them:

  • 2BV7 · Crystal structure of GLTP with bound GM3 · GM3 A1212 · binds LEU30, PHE33, PHE34, LEU37, PRO44, ILE45, ASP48, ILE49 and 21 more
  • 2BV7 · Crystal structure of gltp with bound GM3 · GM3 A1212 · binds LEU30, PHE33, PHE34, LEU37, PRO44, ILE45, ASP48, ILE49 and 21 more

Residues it binds most

PHE 2, LEU 2, ILE 2, VAL 2, LYS 2, ASN 2, ASP 2, GLY 2, HIS 2, PRO 2 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion

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