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Ligand · GM1

GM1 · Aminomethylamide

GM1, Aminomethylamide (C2 H6 N2 O, 74.1 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
GM1
Formula
C2 H6 N2 O
Class
ligand
Structures
4
PDB entries
3

Binding sites

GM1 in 4 structures; the first of them:

  • 3AJN · Structural basis of glycine amide on suppression of protein aggregation by high… · GM1 A130 · binds TRP62, TRP63, LEU75, ASP101
  • 8YTE · Crystal Structure of TrkA D5 domain in complex with macrocyclic peptide · GM1 B101 · binds SER312, LEU313, ARG314, VAL12, CYS13
  • 3AJN · Structural basis of glycine amide on suppression of protein aggregation by high… · GM1 A130 · binds TRP62, TRP63, LEU75, ASP101
  • 7NUS · X-ray structure of HDM2/CMR19 at 1.45A: discovery, X-ray structure and cpp-conjugation… · GM1 D15 · binds LYS51, PHE55, PHE1, ASN13, CCS14

Residues it binds most

ASN 9, PHE 5, TRP 4, LYS 5, ASP 4, GLU 4, ILE 2, LEU 4, SER 4, CCS 3 (residue and the binding sites it lines).

Found with

  • CL · Chloride ion
  • NA · Sodium ion
  • SO4 · Sulfate ion
  • EDO · 1,2-ethanediol

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