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Ligand · GKD

GKD · Guanosine 5'-diphosphate-4-keto-beta-L-gulose

GKD, Guanosine 5'-diphosphate-4-keto-beta-L-gulose (C16 H23 N5 O16 P2, 603.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and…

Component
GKD
Formula
C16 H23 N5 O16 P2
Class
ligand
Structures
2
PDB entries
1

Binding sites

GKD in 2 structures; the first of them:

  • 2C54 · gdp-mannose-3', 5' -epimerase (arabidopsis thaliana),k178r, with gdp-beta-l-gulose and… · GKD A1374 · binds MET102, GLY103, GLY104, MET105, ILE108, SER143, ALA144, CYS145 and 21 more
  • 2C54 · GDP-mannose-3', 5' -epimerase (arabidopsis THALIANA),K178R, with GDP- beta-L-gulose and… · GKD A1374 · binds MET102, GLY103, GLY104, MET105, ILE108, SER143, ALA144, CYS145 and 21 more

Residues it binds most

MET 4, ALA 4, PHE 4, ARG 4, GLU 4, GLY 4, LYS 4, PRO 4, SER 4, ASN 4 (residue and the binding sites it lines).

Found with

  • GKE · Guanosine 5'-diphosphate-beta-L-gulose
  • NAD · Nicotinamide-adenine-dinucleotide
  • EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid
  • FMT · Formic acid

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