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Ligand · GDT

GDT · (2E,4E)-N-[(2S,3R)-3-hydroxy-1-[[(3Z,5S,8S,10S)-10-hydroxy-5-methyl-2,7-dioxo-1,6-diazacyclododec-3-en-8-yl]amino]-1-ox obutan-2-yl]dodeca-2,4-dienamide

GDT, (2E,4E)-N-[(2S,3R)-3-hydroxy-1-[[(3Z,5S,8S,10S)-10-hydroxy-5-methyl-2,7-dioxo-1,6-diazacyclododec-3-en-8-yl]amino]-1-ox obutan-2-yl]dodeca-2,4-dienamide (C27 H44 N4 O6, 520.7 g/mol), in the MolNFT structures on GenesisL1: bound in 2…

Component
GDT
Formula
C27 H44 N4 O6
Class
ligand
Structures
2
PDB entries
1

Binding sites

GDT in 2 structures; the first of them:

  • 3BDM · yeast 20S proteasome:glidobactin A-complex · GDT H500 · binds THR1, ARG19, SER20, THR21, GLN22, ALA27, LYS33, GLY45 and 14 more
  • 3BDM · Yeast 20S PROTEASOME:GLIDOBACTIN a-complex · GDT H500 · binds THR1, ARG19, SER20, THR21, GLN22, ALA27, LYS33, GLY45 and 14 more

Residues it binds most

ALA 8, GLY 8, THR 8, SER 8, ARG 8, PRO 8, ASP 8, LYS 8, TYR 8, VAL 4 (residue and the binding sites it lines).

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