Ligand · GDL
GDL · 2-(acetylamido)-2-deoxy-D-glucono-1,5-lactone
GDL, 2-(acetylamido)-2-deoxy-D-glucono-1,5-lactone (C8 H13 N O6, 219.2 g/mol), in the MolNFT structures on GenesisL1: bound in 12 records (6 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and…
- Component
- GDL
- Formula
- C8 H13 N O6
- Class
- sugar
- Structures
- 12
- PDB entries
- 6
Binding sites
GDL in 12 structures; the first of them:
- 1O7A · Human beta-Hexosaminidase B · GDL A600 · binds ASP208, ARG211, ASP240, HIS294, ASP354, GLU355, TRP405, TRP424 and 6 more
- 1UR8 · Interactions of a family 18 chitinase with the designed inhibitor HM508, and its… · GDL C1 · binds TYR10, PHE51, GLY96, TRP97, ASP142, GLU144, ALA184, MET212 and 5 more
- 1UR9 · Interactions of a family 18 chitinase with the designed inhibitor HM508, and its… · GDL C1 · binds TYR10, PHE51, GLY96, TRP97, ASN142, GLU144, ALA184, MET212 and 5 more
- 2XSB · OgOGA PUGNAc complex · GDL A1436 · binds GLY8, PHE9, TYR10, LYS39, ASP115, CYS156, TYR160, THR191 and 7 more
- 3KIF · The crystal structures of two fragments truncated from 5-bladed beta-propeller lectin… · GDL A110 · binds GLY22, ASN23, GLY24, GLY25, TRP26, PHE29, ASP57, THR58 and 4 more
- 3KIH · The crystal structures of two fragments truncated from 5-bladed beta-propeller lectin… · GDL A98 · binds ILE46, GLY47, ASP48, GLY49, GLY50, TRP51, GLN53, PHE54 and 6 more
- 1O7A · Human beta-hexosaminidase B · GDL A600 · binds ASP208, ARG211, ASP240, HIS294, ASP354, GLU355, TRP405, TRP424 and 6 more
- 1UR8 · Interactions of a family 18 chitinase with the designed inhibitor HM508, and its… · GDL C1 · binds TYR10, PHE51, GLY96, TRP97, ASP142, GLU144, ALA184, MET212 and 5 more
- 1UR9 · Interactions of a family 18 chitinase with the designed inhibitor HM508, and its… · GDL C1 · binds TYR10, PHE51, GLY96, TRP97, ASN142, GLU144, ALA184, MET212 and 5 more
- 2XSB · Ogoga pugnac complex · GDL A1436 · binds GLY8, PHE9, TYR10, LYS39, ASP115, CYS156, TYR160, THR191 and 7 more
- 3KIF · The crystal structures of two fragments truncated from 5-bladed beta- propeller lectin… · GDL A110 · binds GLY22, ASN23, GLY24, GLY25, TRP26, PHE29, ASP57, THR58 and 4 more
Residues it binds most
ASP 46, TRP 48, GLY 36, ASN 32, TYR 22, ILE 28, PHE 36, GLU 20, ARG 22, THR 22 (residue and the binding sites it lines).
Found with
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