Ligand · GDC

GDC · Guanosine-5'-diphosphate-beta-L-galactose

GDC, Guanosine-5'-diphosphate-beta-L-galactose (C16 H25 N5 O16 P2, 605.3 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and…

Component: GDC
Formula: C16 H25 N5 O16 P2
Class: ligand
Structures: 5
PDB entries: 3

Binding sites

GDC in 5 structures; the first of them:

2C59 · gdp-mannose-3', 5' -epimerase (arabidopsis thaliana), with gdp-alpha-d-mannose and… · GDC A1378 · binds MET102, GLY103, GLY104, MET105, ILE108, SER143, ALA144, CYS145 and 21 more
2C5A · GDP-mannose-3', 5' -epimerase (Arabidopsis thaliana),Y174F, with GDP-beta-L-galactose… · GDC A1376 · binds MET102, GLY103, GLY104, MET105, ILE108, SER143, ALA144, CYS145 and 20 more
8SG0 · Crystal Structure of GDP-manose 3,5 epimerase de Myrciaria dubia in complex with… · GDC A405 · binds MET102, GLY103, GLY104, MET105, ILE108, SER143, ALA144, CYS145 and 21 more
2C59 · GDP-mannose-3', 5' -epimerase (arabidopsis thaliana), with GDP-alpha- D-mannose and… · GDC A1378 · binds MET102, GLY103, GLY104, MET105, ILE108, SER143, ALA144, CYS145 and 21 more
2C5A · GDP-mannose-3', 5' -epimerase (arabidopsis THALIANA),Y174F, with GDP- beta-L-galactose… · GDC A1376 · binds MET102, GLY103, GLY104, MET105, ILE108, SER143, ALA144, CYS145 and 20 more

Residues it binds most

MET 10, PHE 10, ALA 10, GLU 10, ARG 10, GLY 10, LYS 10, PRO 10, SER 10, ASN 10 (residue and the binding sites it lines).

Found with

NAD · Nicotinamide-adenine-dinucleotide
BTB · 2-[bis-(2-hydroxy-ethyl)-amino]-2-hydroxymethyl-propane-1,3-diol
FMT · Formic acid
GDD · Guanosine-5'-diphosphate-alpha-D-mannose
SO4 · Sulfate ion

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