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Ligand · GCY

GCY · N-[(2S,3R)-1-(beta-D-galactopyranosyloxy)-3-hydroxyoctadec-4-en-2-yl]tetracosanamide

GCY, N-[(2S,3R)-1-(beta-D-galactopyranosyloxy)-3-hydroxyoctadec-4-en-2-yl]tetracosanamide (C48 H93 N O8, 812.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within…

Component
GCY
Formula
C48 H93 N O8
Class
ligand
Structures
4
PDB entries
2

Binding sites

GCY in 4 structures; the first of them:

  • 3SDA · Crystal structure of autoreactive-Valpha14-Vbeta6 NKT TCR in complex with… · GCY A601 · binds PHE10, CYS12, GLN14, SER28, VAL30, HIS38, TRP40, ILE47 and 33 more
  • 3SDX · Crystal structure of human autoreactive-Valpha24 NKT TCR in complex with… · GCY A601 · binds CYS12, GLN14, PHE70, VAL72, TYR73, SER76, PHE77, ASP80 and 27 more
  • 3SDA · Crystal structure of autoreactive-VALPHA14-VBETA6 nkt TCR in complex with… · GCY A601 · binds PHE10, CYS12, GLN14, SER28, VAL30, HIS38, TRP40, ILE47 and 33 more
  • 3SDX · Crystal structure of human autoreactive-VALPHA24 nkt TCR in complex with… · GCY A601 · binds CYS12, GLN14, PHE70, VAL72, TYR73, SER76, PHE77, ASP80 and 27 more

Residues it binds most

PHE 6, LEU 6, VAL 6, TRP 6, ASP 6, THR 6, SER 6, CYS 6, GLY 6, ILE 6 (residue and the binding sites it lines).

Found with

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • GOL · Glycerol

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