GL1X · GenesisL1 explorer

Ligand · GB6

GB6 · (3R,4R,5R)-3,4-dihydroxy-5-({[(1R)-2-hydroxy-1-phenylethyl]amino}methyl)pyrrolidin-2-one

GB6, (3R,4R,5R)-3,4-dihydroxy-5-({[(1R)-2-hydroxy-1-phenylethyl]amino}methyl)pyrrolidin-2-one (C13 H18 N2 O4, 266.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues…

Component
GB6
Formula
C13 H18 N2 O4
Class
ligand
Structures
2
PDB entries
1

Binding sites

GB6 in 2 structures; the first of them:

  • 3DDF · GOLGI MANNOSIDASE II complex with (3R,4R,5R)-3,4-Dihydroxy-5-({[(1R)-2-hydroxy-1… · GB6 A4001 · binds HIS90, ASP92, TRP95, ASP204, PHE206, ARG228, SER268, TYR269 and 9 more
  • 3DDF · Golgi mannosidase II complex with (3R,4R,5R)-3,4-dihydroxy-5-({[(1R)- 2-hydroxy-1… · GB6 A4001 · binds HIS90, ASP92, TRP95, ASP204, PHE206, ARG228, SER268, TYR269 and 9 more

Residues it binds most

ASP 2, HIS 2, ARG 2, TYR 2, GLY 2, PHE 2, SER 2, THR 2, TRP 2 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • MPD · (4S)-2-methyl-2,4-pentanediol
  • MRD · (4R)-2-methylpentane-2,4-diol

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