GL1X · GenesisL1 explorer

Ligand · GB2

GB2 · (2R,3R,4S)-2-({[(1S)-2-hydroxy-1-phenylethyl]amino}methyl)pyrrolidine-3,4-diol

GB2, (2R,3R,4S)-2-({[(1S)-2-hydroxy-1-phenylethyl]amino}methyl)pyrrolidine-3,4-diol (C13 H20 N2 O3, 252.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å…

Component
GB2
Formula
C13 H20 N2 O3
Class
ligand
Structures
2
PDB entries
1

Binding sites

GB2 in 2 structures; the first of them:

  • 2F1A · GOLGI ALPHA-MANNOSIDASE II COMPLEX WITH (2R,3R,4S)-2-({[(1S)-2-hydroxy-1-phenylethyl]amino… · GB2 A1804 · binds HIS90, ASP92, TRP95, ASP204, PHE206, ARG228, SER268, TYR269 and 6 more
  • 2F1A · Golgi alpha-mannosidase II complex with (2R,3R,4S)-2-({[(1S)-2… · GB2 A1804 · binds HIS90, ASP92, TRP95, ASP204, PHE206, ARG228, SER268, TYR269 and 6 more

Residues it binds most

ASP 2, ARG 2, HIS 2, TYR 2, GLY 2, PHE 2, SER 2, TRP 2 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • PO4 · Phosphate ion
  • MPD · (4S)-2-methyl-2,4-pentanediol

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