GL1X · GenesisL1 explorer

Ligand · G4M

G4M · [(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S,5S,6R)-3,4-dihydroxy-5-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-6-methyltetrahydro-2H-pyran-2-yl dihydrogen diphosphate

G4M, [(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S,5S,6R)-3,4-dihydroxy-5-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-6-methyltetrahydro-2H-pyran-2…

Component
G4M
Formula
C24 H36 N7 O19 P3
Class
ligand
Structures
4
PDB entries
2

Binding sites

G4M in 4 structures; the first of them:

  • 3B8X · Crystal structure of GDP-4-keto-6-deoxymannose-3-dehydratase (ColD) H188N mutant with… · G4M A500 · binds LEU6, ALA7, SER55, GLY56, SER57, ASN60, SER87, TRP88 and 25 more
  • 3DR4 · GDP-perosamine synthase K186A mutant from Caulobacter crescentus with bound sugar ligand · G4M A500 · binds SER8, VAL9, ALA10, PRO12, ASN59, GLY60, THR61, LEU64 and 28 more
  • 3B8X · Crystal structure of GDP-4-keto-6-deoxymannose-3-dehydratase (cold) H188N mutant with… · G4M A500 · binds LEU6, ALA7, SER55, GLY56, SER57, ASN60, SER87, TRP88 and 25 more
  • 3DR4 · GDP-perosamine synthase K186A mutant from caulobacter crescentus with bound sugar ligand · G4M A500 · binds SER8, VAL9, ALA10, PRO12, ASN59, GLY60, THR61, LEU64 and 28 more

Residues it binds most

SER 12, THR 12, ALA 12, ASN 12, GLU 12, GLY 12, PHE 12, VAL 12, ARG 12, TRP 12 (residue and the binding sites it lines).

Found with

  • EDO · 1,2-ethanediol
  • NA · Sodium ion

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