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Ligand · G1M

G1M · 2'-deoxy-5'-O-[(R)-hydroxy({(S)-hydroxy[(1R)-1-phosphonoethyl]phosphoryl}oxy)phosphoryl]guanosine

G1M, 2'-deoxy-5'-O-[(R)-hydroxy({(S)-hydroxy[(1R)-1-phosphonoethyl]phosphoryl}oxy)phosphoryl]guanosine (C12 H20 N5 O12 P3, 519.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its…

Component
G1M
Formula
C12 H20 N5 O12 P3
Class
ligand
Structures
2
PDB entries
1

Binding sites

G1M in 2 structures; the first of them:

  • 3JPP · Ternary complex of DNA polymerase beta with a dideoxy terminated primer and… · G1M A338 · binds ARG149, GLY179, SER180, ARG183, SER188, GLY189, ASP190, ASP192 and 11 more
  • 3JPP · Ternary complex of DNA polymerase beta with a dideoxy terminated primer and… · G1M A338 · binds ARG149, GLY179, SER180, ARG183, SER188, GLY189, ASP190, ASP192 and 11 more

Residues it binds most

ARG 2, ASP 2, GLY 2, SER 2, ASN 2, DC 2, DG 2, DOC 2, PHE 2, THR 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • NA · Sodium ion
  • CL · Chloride ion

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