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Ligand · FYB

FYB · ~{N}-[[4,4-bis(fluoranyl)-1-oxidanyl-cyclohexyl]methyl]-6-fluoranyl-4-oxidanylidene-chromene-2-carboxamide

FYB, ~{N}-[[4,4-bis(fluoranyl)-1-oxidanyl-cyclohexyl]methyl]-6-fluoranyl-4-oxidanylidene-chromene-2-carboxamide (C17 H16 F3 N O4, 355.3 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (3 PDB entries). Every binding site…

Component
FYB
Formula
C17 H16 F3 N O4
Class
ligand
Structures
5
PDB entries
3

Binding sites

FYB in 5 structures; the first of them:

  • 6HCU · Crystal Structure of Lysyl-tRNA Synthetase from Plasmodium falciparum bound to a difluoro… · FYB A601 · binds ARG330, GLU332, GLY333, THR337, HIS338, ASN339, PHE342, SER344 and 8 more
  • 6HCW · Crystal Structure of Lysyl-tRNA Synthetase from Cryptosporidium parvum complexed with… · FYB A602 · binds ARG295, GLU297, THR302, HIS303, ASN304, PHE307, ALA309, GLU311 and 10 more
  • 6HCU · Crystal structure of lysyl-tRNA synthetase from plasmodium falciparum bound to a difluoro… · FYB A601 · binds ARG330, GLU332, GLY333, THR337, HIS338, ASN339, PHE342, SER344 and 8 more
  • 6HCW · Crystal structure of lysyl-tRNA synthetase from cryptosporidium parvum complexed with… · FYB A602 · binds ARG295, GLU297, THR302, HIS303, ASN304, PHE307, ALA309, GLU311 and 10 more
  • 6O3F · Crystal structure of lysyl-tRNA synthetase from chlamydia trachomatis with complexed with… · FYB A701 · binds ARG271, GLU273, THR278, HIS279, ASN280, PHE283, MET285, GLU438 and 9 more

Residues it binds most

GLU 10, GLY 10, ARG 10, ASN 10, LEU 10, ILE 10, HIS 10, PHE 10, THR 10, CYS 6 (residue and the binding sites it lines).

Found with

  • TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol
  • PEG · Di(hydroxyethyl)ether
  • SO4 · Sulfate ion
  • EDO · 1,2-ethanediol
  • PG4 · Tetraethylene glycol

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