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Ligand · FF7

FF7 · 5'-O-[(R)-{[(R)-[(R)-chloro(phosphono)methyl](hydroxy) phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxycytidine

FF7, 5'-O-[(R)-{[(R)-[(R)-chloro(phosphono)methyl](hydroxy) phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxycytidine (C10 H17 Cl N3 O12 P3, 499.6 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding…

Component
FF7
Formula
C10 H17 Cl N3 O12 P3
Class
ligand
Structures
2
PDB entries
1

Binding sites

FF7 in 2 structures; the first of them:

  • 6CTT · Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer… · FF7 A401 · binds DG6, 2DA10, GLY179, SER180, ARG183, SER188, GLY189, ASP190 and 8 more
  • 6CTT · Ternary complex crystal structure of DNA polymerase beta with a dideoxy terminated primer… · FF7 A401 · binds DG6, 2DA10, GLY179, SER180, ARG183, SER188, GLY189, ASP190 and 8 more

Residues it binds most

ASP 2, GLY 2, SER 2, 2DA 2, ARG 2, ASN 2, DG 2, PHE 2, THR 2, TYR 2 (residue and the binding sites it lines).

Found with

  • DC · 2'-deoxycytidine-5'-monophosphate
  • DJJ · 5'-O-[(R)-{[(R)-[(S)-chloro(phosphono)methyl](hydroxy) phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxycytidine
  • MG · Magnesium ion
  • NA · Sodium ion
  • CL · Chloride ion

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