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Ligand · FDY

FDY · 5'-O-[(R)-{[(R)-[(R)-fluoro(phosphono)methyl](hydroxy) phosphoryl]oxy}(hydroxy)phosphoryl]thymidine

FDY, 5'-O-[(R)-{[(R)-[(R)-fluoro(phosphono)methyl](hydroxy) phosphoryl]oxy}(hydroxy)phosphoryl]thymidine (C11 H18 F N2 O13 P3, 498.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with…

Component
FDY
Formula
C11 H18 F N2 O13 P3
Class
ligand
Structures
2
PDB entries
1

Binding sites

FDY in 2 structures; the first of them:

  • 6CTK · Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer… · FDY A401 · binds DA6, DOC10, GLY179, SER180, ARG183, SER188, GLY189, ASP190 and 8 more
  • 6CTK · Ternary complex crystal structure of DNA polymerase beta with a dideoxy terminated primer… · FDY A401 · binds DA6, DOC10, GLY179, SER180, ARG183, SER188, GLY189, ASP190 and 8 more

Residues it binds most

ASP 2, GLY 2, SER 2, ARG 2, ASN 2, DA 2, DOC 2, PHE 2, THR 2, TYR 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • NA · Sodium ion

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