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Ligand · F56

F56 · 3-[(E,2S,4S)-2,4-dimethyloct-6-enoyl]-4-oxidanyl-1H-pyridin-2-one

F56, 3-[(E,2S,4S)-2,4-dimethyloct-6-enoyl]-4-oxidanyl-1H-pyridin-2-one (C15 H21 N O3, 263.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues…

Component
F56
Formula
C15 H21 N O3
Class
ligand
Structures
4
PDB entries
2

Binding sites

F56 in 4 structures; the first of them:

  • 7BQK · The structure of PdxI in complex with its substrate analogue · F56 A501 · binds TRP158, HIS161, PHE204, TYR205, LEU229, PHE236, ILE242, THR333 and 8 more
  • 7BQO · The structure of HpiI in complex with its substrate analogue · F56 A501 · binds TRP158, HIS161, PHE204, TYR205, LEU229, PHE236, ILE242, THR335 and 7 more
  • 7BQK · The structure of pdxi in complex with its substrate analogue · F56 A501 · binds TRP158, HIS161, PHE204, TYR205, LEU229, PHE236, THR333, HIS336 and 6 more
  • 7BQO · The structure of hpii in complex with its substrate analogue · F56 A501 · binds TRP158, HIS161, PHE204, TYR205, LEU229, PHE236, ILE242, THR335 and 6 more

Residues it binds most

ILE 6, HIS 6, PHE 6, VAL 5, GLN 6, LEU 6, LYS 6, MET 6, THR 6, TRP 6 (residue and the binding sites it lines).

Found with

  • GOL · Glycerol
  • B3P · 2-[3-(2-hydroxy-1,1-dihydroxymethyl-ethylamino)-propylamino]-2-hydroxymethyl-propane-1,3-diol
  • EDO · 1,2-ethanediol
  • IMD · Imidazole

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