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Ligand · EDV

EDV · 1-(2-deoxy-2-methyl-beta-D-arabinofuranosyl)-5-ethynylpyrimidine-2,4(1H,3H)-dione

EDV, 1-(2-deoxy-2-methyl-beta-D-arabinofuranosyl)-5-ethynylpyrimidine-2,4(1H,3H)-dione (C12 H14 N2 O5, 266.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5…

Component
EDV
Formula
C12 H14 N2 O5
Class
ligand
Structures
2
PDB entries
1

Binding sites

EDV in 2 structures; the first of them:

  • 4OQX · Crystal structure of thymidine kinase from herpes simplex virus type 1 in complex with… · EDV A404 · binds HIS58, GLU83, TRP88, ILE97, ILE100, TYR101, GLN125, MET128 and 7 more
  • 4OQX · Crystal structure of thymidine kinase from herpes simplex virus type 1 in complex with… · EDV A404 · binds HIS58, GLU83, TRP88, ILE97, ILE100, TYR101, GLN125, MET128 and 7 more

Residues it binds most

TYR 4, ALA 4, GLU 4, ILE 4, ARG 4, GLN 4, HIS 4, MET 4, TRP 4 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion

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