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Ligand · EDU

EDU · 2'-deoxy-5-ethynyluridine

EDU, 2'-deoxy-5-ethynyluridine (C11 H12 N2 O5, 252.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with…

Component
EDU
Formula
C11 H12 N2 O5
Class
ligand
Structures
2
PDB entries
1

Binding sites

EDU in 2 structures; the first of them:

  • 4OQN · Crystal structure of thymidine kinase from herpes simplex virus type 1 in complex with EdU · EDU A404 · binds HIS58, GLU83, TRP88, ILE97, ILE100, TYR101, GLN125, MET128 and 7 more
  • 4OQN · Crystal structure of thymidine kinase from herpes simplex virus type 1 in complex with edu · EDU A404 · binds HIS58, GLU83, TRP88, ILE97, ILE100, TYR101, GLN125, MET128 and 7 more

Residues it binds most

TYR 4, ALA 4, GLU 4, ILE 4, ARG 4, GLN 4, HIS 4, MET 4, TRP 4 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion

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